# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "aardvark-bio"
version = "0.10.4"
authors = ["holtjma <mholt@pacificbiosciences.com>"]
build = "build.rs"
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Aardvark - A tool for sniffing out the differences in vari-Ants"
homepage = "https://github.com/PacificBiosciences/aardvark"
readme = "README.md"
license = "MIT"
repository = "https://github.com/PacificBiosciences/aardvark"

[lib]
name = "aardvark_bio"
path = "src/lib.rs"

[[bin]]
name = "aardvark"
path = "src/main.rs"

[dependencies.anyhow]
version = "1.0.97"

[dependencies.chrono]
version = "0.4.40"

[dependencies.clap]
version = "4.5.35"
features = ["derive"]

[dependencies.coitrees]
version = "0.4.0"

[dependencies.csv]
version = "1.3.1"

[dependencies.derive_builder]
version = "0.20.2"

[dependencies.env_logger]
version = "0.11.8"

[dependencies.exitcode]
version = "1.1.2"

[dependencies.flate2]
version = "1.1.1"

[dependencies.indexmap]
version = "2.9.0"

[dependencies.indicatif]
version = "0.17.11"
features = ["rayon"]

[dependencies.itertools]
version = "0.14.0"

[dependencies.lazy_static]
version = "1.5.0"

[dependencies.log]
version = "0.4.27"

[dependencies.noodles]
version = "0.100.0"
features = [
    "bed",
    "bgzf",
    "core",
    "tabix",
    "vcf",
]

[dependencies.noodles-util]
version = "0.69.0"
features = ["variant"]

[dependencies.priority-queue]
version = "2.3.1"

[dependencies.rayon]
version = "1.10.0"

[dependencies.rust-lib-reference-genome]
version = "0.2.1"

[dependencies.rustc-hash]
version = "2.1.1"

[dependencies.serde]
version = "1.0.219"

[dependencies.serde_json]
version = "1.0.140"

[dependencies.strum]
version = "0.27.1"

[dependencies.strum_macros]
version = "0.27.1"

[dependencies.thiserror]
version = "2.0.12"

[dev-dependencies.approx_eq]
version = "0.1.8"

[build-dependencies.vergen-gitcl]
version = "1.0.5"
features = ["build"]

[profile.release]
lto = "fat"
codegen-units = 1
