row_id	enabled	dataset	r1	r2	modes	expectation	drift_gate_profile	require_identical_comparisons	require_sequence_outputs	expected_failure_modes	skip_expected_failure_java	reads	table_reads	threads	zipthreads	java_xmx	mem	rust_mem_auto_from_java	rust_mem_auto_max_bytes	write_outputs	java_max_rss_kb	rust_max_rss_kb	timeout	notes
phix_exact_core	1	phix	vendor/BBTools-master/resources/sample1.fq.gz	vendor/BBTools-master/resources/sample2.fq.gz	default k40 k40_fixspikes	exact	none	1	1		0	all	all	4	1	2g	768m	0		1	4000000	2000000	5m	Small bundled paired fixture; byte-identical hist/rhist and sequence output are required.
phix_multipass_sequence_exact	1	phix	vendor/BBTools-master/resources/sample1.fq.gz	vendor/BBTools-master/resources/sample2.fq.gz	passes2	exact	none	1	1		0	all	all	4	1	2g	768m	0		1	4000000	2000000	5m	Covered multipass row requires byte-identical hist/rhist and final-stage keep/toss sequence outputs.
phix_common_feature_exact	1	phix	vendor/BBTools-master/resources/sample1.fq.gz	vendor/BBTools-master/resources/sample2.fq.gz	keepall ecc_mark qtrim_right minlen passes2_ecc_mark	exact	none	1	1		0	all	all	4	1	2g	768m	0		1	4000000	2000000	8m	Common user-facing feature probes: keepall, ECC marking, qtrim, minlen filtering, and multipass ECC must keep byte-identical hist/rhist and sequence outputs.
human_bounded_core_50k	1	human_50k	tmp/human_benchmark_8threads/human_GRCh38_500k_R1.fq.gz	tmp/human_benchmark_8threads/human_GRCh38_500k_R2.fq.gz	default prefilter k40_fixspikes	bounded	bounded	0	0		0	50000	50000	8	1	4g	768m	1	5000000000	0	8000000	6000000	8m	Local human slice; bounded approximate sketch drift is allowed and stage timings/RSS are authoritative.
human_bounded_core_500k	1	human_500k	tmp/human_benchmark_8threads/human_GRCh38_500k_R1.fq.gz	tmp/human_benchmark_8threads/human_GRCh38_500k_R2.fq.gz	default prefilter k40_fixspikes	bounded	bounded	0	0		0	500000	500000	8	1	4g	768m	1	5000000000	0	10000000	8000000	20m	Larger local human slice for publish-grade bounded sketch timing/RSS; null sequence outputs keep the run desktop-safe.
human_countup_guard_10k	0	human_10k	tmp/human_benchmark_8threads/human_GRCh38_500k_R1.fq.gz	tmp/human_benchmark_8threads/human_GRCh38_500k_R2.fq.gz	countup countup_tossbadreads	rust_better_java_crashes	none	0	0	countup countup_tossbadreads	1	10000	10000	8	1	4g	768m	0		0	8000000	3000000	8m	Disabled by default; intended to classify known Java-failing count-up probes without blocking the core matrix.
