pub mod args;
mod batch;
mod debug;
mod diff;
mod doctor;
pub mod handlers;
mod package;
mod pipeline;
mod pipeline_config;
mod pipeline_lock;
mod pipeline_output;
mod workflow;
pub use args::{
    BatchCommand, Cli, Command, FastaCommand, KindArg, PackageCommand, PaddingArg, SeqCommand,
    TokenizerCommand, TokenizerProfileArg,
};
pub(crate) use batch::run_batch_command;
pub(crate) use debug::run_debug;
pub(crate) use diff::run_diff;
pub(crate) use doctor::build_doctor_report;
pub use handlers::run;
pub(crate) use package::run_package_command;
pub(crate) use pipeline::{run_pipeline, PipelineRunOptions};
pub(crate) use workflow::run_workflow;
