# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.88"
name = "biors"
version = "0.48.0"
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "Command-line tools for bio-rs biological AI model input workflows."
readme = "README.md"
keywords = [
    "bioinformatics",
    "protein",
    "cli",
    "ai",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "MIT OR Apache-2.0"
repository = "https://github.com/bio-rs/bio-rs"

[[bin]]
name = "biors"
path = "src/main.rs"

[[test]]
name = "benchmark_artifact_tools"
path = "tests/benchmark_artifact_tools.rs"

[[test]]
name = "cli_batch"
path = "tests/cli_batch.rs"

[[test]]
name = "cli_cache"
path = "tests/cli_cache.rs"

[[test]]
name = "cli_dataset"
path = "tests/cli_dataset.rs"

[[test]]
name = "cli_debug_command"
path = "tests/cli_debug_command.rs"

[[test]]
name = "cli_diff_command"
path = "tests/cli_diff_command.rs"

[[test]]
name = "cli_doctor"
path = "tests/cli_doctor.rs"

[[test]]
name = "cli_errors"
path = "tests/cli_errors.rs"

[[test]]
name = "cli_fasta"
path = "tests/cli_fasta.rs"

[[test]]
name = "cli_formats"
path = "tests/cli_formats.rs"

[[test]]
name = "cli_inspect"
path = "tests/cli_inspect.rs"

[[test]]
name = "cli_model_input"
path = "tests/cli_model_input.rs"

[[test]]
name = "cli_package_bridge"
path = "tests/cli_package_bridge.rs"

[[test]]
name = "cli_package_convert_manifest"
path = "tests/cli_package_convert_manifest.rs"

[[test]]
name = "cli_package_convert_project"
path = "tests/cli_package_convert_project.rs"

[[test]]
name = "cli_package_convert_project_errors"
path = "tests/cli_package_convert_project_errors.rs"

[[test]]
name = "cli_package_init_metadata"
path = "tests/cli_package_init_metadata.rs"

[[test]]
name = "cli_package_init_runtime_defaults"
path = "tests/cli_package_init_runtime_defaults.rs"

[[test]]
name = "cli_package_init_safety"
path = "tests/cli_package_init_safety.rs"

[[test]]
name = "cli_package_inspect"
path = "tests/cli_package_inspect.rs"

[[test]]
name = "cli_package_tools"
path = "tests/cli_package_tools.rs"

[[test]]
name = "cli_package_validate_checksum"
path = "tests/cli_package_validate_checksum.rs"

[[test]]
name = "cli_package_validate_manifest"
path = "tests/cli_package_validate_manifest.rs"

[[test]]
name = "cli_package_validate_pipeline_config"
path = "tests/cli_package_validate_pipeline_config.rs"

[[test]]
name = "cli_package_validate_pipeline_inputs"
path = "tests/cli_package_validate_pipeline_inputs.rs"

[[test]]
name = "cli_package_validate_tokenizer_config"
path = "tests/cli_package_validate_tokenizer_config.rs"

[[test]]
name = "cli_package_validate_vocab"
path = "tests/cli_package_validate_vocab.rs"

[[test]]
name = "cli_package_verify_fixture_results"
path = "tests/cli_package_verify_fixture_results.rs"

[[test]]
name = "cli_package_verify_observations"
path = "tests/cli_package_verify_observations.rs"

[[test]]
name = "cli_package_verify_preflight"
path = "tests/cli_package_verify_preflight.rs"

[[test]]
name = "cli_package_verify_report"
path = "tests/cli_package_verify_report.rs"

[[test]]
name = "cli_pipeline_config"
path = "tests/cli_pipeline_config.rs"

[[test]]
name = "cli_pipeline_lock"
path = "tests/cli_pipeline_lock.rs"

[[test]]
name = "cli_service"
path = "tests/cli_service.rs"

[[test]]
name = "cli_tokenize"
path = "tests/cli_tokenize.rs"

[[test]]
name = "cli_tokenizer"
path = "tests/cli_tokenizer.rs"

[[test]]
name = "cli_ux"
path = "tests/cli_ux.rs"

[[test]]
name = "cli_version"
path = "tests/cli_version.rs"

[[test]]
name = "cli_workflow"
path = "tests/cli_workflow.rs"

[[test]]
name = "release_contract_docs"
path = "tests/release_contract_docs.rs"

[[test]]
name = "release_contributor_docs"
path = "tests/release_contributor_docs.rs"

[[test]]
name = "release_doc_inventory"
path = "tests/release_doc_inventory.rs"

[[test]]
name = "release_gate_policy"
path = "tests/release_gate_policy.rs"

[[test]]
name = "release_metadata_versions"
path = "tests/release_metadata_versions.rs"

[[test]]
name = "release_readiness"
path = "tests/release_readiness.rs"

[[test]]
name = "release_readiness_demo"
path = "tests/release_readiness_demo.rs"

[[test]]
name = "release_readiness_interop"
path = "tests/release_readiness_interop.rs"

[[test]]
name = "release_surface_docs"
path = "tests/release_surface_docs.rs"

[[test]]
name = "schema_cli_package_contract"
path = "tests/schema_cli_package_contract.rs"

[[test]]
name = "schema_cli_sequence_contract"
path = "tests/schema_cli_sequence_contract.rs"

[[test]]
name = "schema_contract"
path = "tests/schema_contract.rs"

[[test]]
name = "schema_package_contract"
path = "tests/schema_package_contract.rs"

[[test]]
name = "sequence_cli"
path = "tests/sequence_cli.rs"

[dependencies.biors-core]
version = "0.48.0"

[dependencies.clap]
version = "4.5.37"
features = ["derive"]

[dependencies.clap_complete]
version = "4.5.48"

[dependencies.serde]
version = "1.0.219"
features = ["derive"]

[dependencies.serde_json]
version = "1.0.140"

[dev-dependencies.jsonschema]
version = "0.18.3"

[dev-dependencies.toml]
version = "1.1.2"
