# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
name = "biovault"
version = "0.1.120"
authors = ["Madhava Jay <madhava@openmined.org>"]
build = "build.rs"
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "A bioinformatics data vault CLI tool"
readme = false
keywords = [
    "bioinformatics",
    "cli",
    "data",
    "vault",
]
categories = [
    "command-line-utilities",
    "science",
]
license = "Apache-2.0"
repository = "https://github.com/openmined/biovault"

[features]
e2e-tests = []
slow-tests = []

[lib]
name = "biovault"
path = "src/lib.rs"

[[bin]]
name = "bv"
path = "src/main.rs"

[[test]]
name = "biovault_integration_test"
path = "tests/biovault_integration_test.rs"

[[test]]
name = "cli_test"
path = "tests/cli_test.rs"

[[test]]
name = "const_test"
path = "tests/const_test.rs"

[[test]]
name = "genotype_detect_test"
path = "tests/genotype_detect_test.rs"

[[test]]
name = "hard_reset_test"
path = "tests/hard_reset_test.rs"

[[test]]
name = "integration_test"
path = "tests/integration_test.rs"

[[test]]
name = "key_flow_test"
path = "tests/key_flow_test.rs"

[[test]]
name = "permission_test"
path = "tests/permission_test.rs"

[[test]]
name = "sql_integration_test"
path = "tests/sql_integration_test.rs"

[dependencies.anyhow]
version = "1.0"

[dependencies.base64]
version = "0.22"

[dependencies.blake3]
version = "1.5"
features = ["rayon"]

[dependencies.chrono]
version = "0.4"
features = ["serde"]

[dependencies.clap]
version = "4.5"
features = [
    "derive",
    "env",
]

[dependencies.colored]
version = "2.1"

[dependencies.csv]
version = "1.3"

[dependencies.dialoguer]
version = "0.11"

[dependencies.dirs]
version = "5.0"

[dependencies.flate2]
version = "1.0"

[dependencies.futures-util]
version = "0.3"

[dependencies.glob]
version = "0.3"

[dependencies.globset]
version = "0.4"

[dependencies.hex]
version = "0.4"

[dependencies.include_dir]
version = "0.7"

[dependencies.indicatif]
version = "0.17"

[dependencies.lazy_static]
version = "1.4"

[dependencies.libc]
version = "0.2"

[dependencies.notify]
version = "6.1"

[dependencies.rand]
version = "0.9"

[dependencies.regex]
version = "1.10"

[dependencies.reqwest]
version = "0.12"
features = [
    "rustls-tls",
    "stream",
    "json",
    "blocking",
]
default-features = false

[dependencies.rusqlite]
version = "0.32"
features = [
    "bundled",
    "chrono",
]

[dependencies.self_update]
version = "0.41"
features = [
    "archive-tar",
    "compression-flate2",
    "rustls",
]
default-features = false

[dependencies.semver]
version = "1.0"

[dependencies.serde]
version = "1.0"
features = ["derive"]

[dependencies.serde_json]
version = "1.0"

[dependencies.serde_yaml]
version = "0.9"

[dependencies.sha2]
version = "0.10"

[dependencies.syftbox-sdk]
version = "0.1.9"
features = [
    "crypto",
    "process",
    "auth",
]

[dependencies.sysinfo]
version = "0.30"

[dependencies.tempfile]
version = "3.12"

[dependencies.thiserror]
version = "1.0"

[dependencies.tokio]
version = "1.40"
features = ["full"]

[dependencies.tracing]
version = "0.1"

[dependencies.tracing-subscriber]
version = "0.3"
features = ["env-filter"]

[dependencies.uuid]
version = "1.10"
features = ["v4"]

[dependencies.walkdir]
version = "2.4"

[dependencies.which]
version = "6.0"

[dev-dependencies.assert_cmd]
version = "2.0"

[dev-dependencies.predicates]
version = "3.1"

[dev-dependencies.serial_test]
version = "3.1"

[dev-dependencies.syftbox-sdk]
version = "0.1.9"
features = [
    "crypto",
    "process",
    "auth",
    "test-plaintext",
]

[dev-dependencies.tempfile]
version = "3.12"

[build-dependencies.serde]
version = "1.0"
features = ["derive"]

[build-dependencies.serde_yaml]
version = "0.9"
