Bismark report for: sampleD_R1.fq.gz and sampleD_R2.fq.gz (version: v0.25.1)

Final Alignment report
======================
Sequence pairs analysed in total:	500
Number of paired-end alignments with a unique best hit:	400
Mapping efficiency:	80.00%
Sequence pairs with no alignments under any condition:	60
Sequence pairs did not map uniquely:	40
Sequence pairs which were discarded because genomic sequence could not be extracted:	0

Number of sequence pairs with unique best (first) alignment came from the bowtie output:
CT/GA/CT:	200	((converted) top strand)
GA/CT/CT:	0	(complementary to (converted) top strand)
GA/CT/GA:	0	(complementary to (converted) bottom strand)
CT/GA/GA:	200	((converted) bottom strand)

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	25000

Total methylated C's in CpG context:	1000
Total methylated C's in CHG context:	10
Total methylated C's in CHH context:	20

Total unmethylated C's in CpG context:	500
Total unmethylated C's in CHG context:	11000
Total unmethylated C's in CHH context:	12470

C methylated in CpG context:	66.7%
C methylated in CHG context:	0.1%
C methylated in CHH context:	0.2%
