Bismark report for: /tmp/claude-501/.tmpajftee/reads.fq (version: v0.25.1)
Option '--pbat' specified: alignments to original strands (OT and OB) strands were ignored (i.e. not performed)
Bismark was run with Bowtie 2 against the bisulfite genome of /private/tmp/claude-501/.tmpajftee/ with the specified options: -q --score-min L,0,-0.2 --ignore-quals

Final Alignment report
======================
Sequences analysed in total:	1
Number of alignments with a unique best hit from the different alignments:	0
Mapping efficiency:	0.0%
Sequences with no alignments under any condition:	1
Sequences did not map uniquely:	0
Sequences which were discarded because genomic sequence could not be extracted:	0

Number of sequences with unique best (first) alignment came from the bowtie output:
CT/CT:	0	((converted) top strand)
CT/GA:	0	((converted) bottom strand)
GA/CT:	0	(complementary to (converted) top strand)
GA/GA:	0	(complementary to (converted) bottom strand)

Final Cytosine Methylation Report
=================================
Total number of C's analysed:	0

Total methylated C's in CpG context:	0
Total methylated C's in CHG context:	0
Total methylated C's in CHH context:	0
Total methylated C's in Unknown context:	0

Total unmethylated C's in CpG context:	0
Total unmethylated C's in CHG context:	0
Total unmethylated C's in CHH context:	0
Total unmethylated C's in Unknown context:	0

Can't determine percentage of methylated Cs in CpG context if value was 0
Can't determine percentage of methylated Cs in CHG context if value was 0
Can't determine percentage of methylated Cs in CHH context if value was 0
Can't determine percentage of methylated Cs in Unknown context (CN or CHN) if value was 0


Bismark completed in 0d 0h 0m 0s
