Examples:

1. Convert from Bismark methylation report to BSX file format

bsxplorer convert --from bismark --into bsx -o report.bsx --fai example.fa.fai -c 20000 bismark_report.CX_report.txt

2. Convert from Bismark to BedGraph

bsxplorer convert --from bismark --into bed-graph -o report.bedGraph bismark_report.CX_report.txt

3. Convert from BSX file format to Bismark

bsxplorer convert --from bsx --into Bismark -o report.CX_report.txt bsx_report.bsx
