# THIS FILE IS AUTOMATICALLY GENERATED BY CARGO
#
# When uploading crates to the registry Cargo will automatically
# "normalize" Cargo.toml files for maximal compatibility
# with all versions of Cargo and also rewrite `path` dependencies
# to registry (e.g., crates.io) dependencies.
#
# If you are reading this file be aware that the original Cargo.toml
# will likely look very different (and much more reasonable).
# See Cargo.toml.orig for the original contents.

[package]
edition = "2021"
rust-version = "1.80"
name = "gapsmith-fill"
version = "0.1.0"
authors = ["Robert Hoehndorf <robert.hoehndorf@kaust.edu.sa>"]
build = false
autolib = false
autobins = false
autoexamples = false
autotests = false
autobenches = false
description = "FBA / pFBA / gap-filling via good_lp + HiGHS for gapseq"
homepage = "https://bio-ontology-research-group.github.io/gapsmith/"
readme = "README.md"
keywords = [
    "bioinformatics",
    "genomics",
    "metabolism",
    "metabolic-network",
    "fba",
]
categories = [
    "science",
    "command-line-utilities",
]
license = "GPL-3.0-or-later"
repository = "https://github.com/bio-ontology-research-group/gapsmith"

[features]
cbc = ["good_lp/coin_cbc"]
default = []

[lib]
name = "gapsmith_fill"
path = "src/lib.rs"

[[test]]
name = "atp_cycle"
path = "tests/atp_cycle.rs"

[[test]]
name = "fill_smoke"
path = "tests/fill_smoke.rs"

[[test]]
name = "suite_toy"
path = "tests/suite_toy.rs"

[[test]]
name = "textbook"
path = "tests/textbook.rs"

[dependencies.anyhow]
version = "1"

[dependencies.gapsmith-core]
version = "0.1.0"

[dependencies.gapsmith-db]
version = "0.1.0"

[dependencies.gapsmith-draft]
version = "0.1.0"

[dependencies.good_lp]
version = "1.15"
features = ["highs"]
default-features = false

[dependencies.rayon]
version = "1.10"

[dependencies.serde]
version = "1"
features = [
    "derive",
    "rc",
]

[dependencies.sprs]
version = "0.11"
features = ["serde"]
default-features = false

[dependencies.thiserror]
version = "2"

[dependencies.tracing]
version = "0.1"

[dev-dependencies.anyhow]
version = "1"

[dev-dependencies.gapsmith-io]
version = "0.1.0"

[dev-dependencies.gapsmith-sbml]
version = "0.1.0"

[dev-dependencies.tempfile]
version = "3"
