Struct gfatk::stats::Stats

pub struct Stats(pub Vec<Stat>);

A vector of Stat.

Tuple Fields

0: Vec<Stat>

Implementations

impl Stats

pub fn push(&mut self, stat: Stat)

Add a new Stat to Stats.

pub fn print_tabular(&self)

Print tabular form of Stats to STDOUT.

pub fn extract_organelle(
    &mut self,
    size_lower: usize,
    size_upper: usize,
    gc_lower: f32,
    gc_upper: f32
) -> Result<Vec<usize>>

Extract the putative mitochondrial/chloroplast genome from a GFA file.

The upper and lower limits of genome size and GC content are supplied through the CLI. As the defaults will be different, the same function is accessed entry points in the CLI.