Expand description
Utility functions used throughout.
Structs
A vector of
GFAGraphPair’s.A pair consisting of a node index and a segment ID.
Functions
Format a sequence length (
usize) to kilobases.Calculate the GC content of a string slice.
Get the coverage associated with an edge (
ec tag in the GFA).Format a GFA option field into a string.
Check if there is anything coming from STDIN.
Collect nucleotide counts into a
HashMap.Parse a CIGAR string slice into an overlap length.
Reverse complement a string slice.
Used in
reverse_complement to switch to a complementary base.