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          "receipt chain",
          "immutable receipt",
          "Ed25519",
          "signature verification",
          "provenance"
        ]
      },
      {
        "file": "/home/user/ggen/crates/ggen-marketplace/src/guards/validation_receipt.rs",
        "sections": "full file",
        "strength": 0.95,
        "key_phrases": [
          "receipt",
          "signature verification",
          "immutable",
          "hash chain"
        ]
      }
    ],
    "C_AGENTS_ONLY_ARCHITECTURE": [
      {
        "file": "/home/user/ggen/AUTONOMOUS_ONTOLOGY_SYSTEM.md",
        "sections": "Overview",
        "strength": 0.95,
        "key_phrases": [
          "human-free",
          "autonomous",
          "agent-driven",
          "closed-loop"
        ]
      },
      {
        "file": "/home/user/ggen/crates/ggen-dod/DEFINITION_OF_DONE.md",
        "sections": "Governance and Evolution, Human Role Constrained",
        "strength": 1.0,
        "key_phrases": [
          "no human arbitration",
          "autonomous",
          "agent-driven",
          "no humans in critical path"
        ]
      },
      {
        "file": "/home/user/ggen/crates/ggen-domain/src/ahi_contract.rs",
        "sections": "lines 1-15",
        "strength": 0.9,
        "key_phrases": [
          "autonomous",
          "without human code editing",
          "agent system"
        ]
      }
    ],
    "C_INVARIANT_ENFORCEMENT": [
      {
        "file": "/home/user/ggen/crates/ggen-dod/DEFINITION_OF_DONE.md",
        "sections": "Typing: O ⊨ Σ and Σ ⊨ Q",
        "strength": 1.0,
        "key_phrases": [
          "invariant",
          "enforcement",
          "CTT",
          "verified",
          "constraint"
        ]
      },
      {
        "file": "/home/user/ggen/crates/ggen-dod/src/lib.rs",
        "sections": "lines 40-50",
        "strength": 0.95,
        "key_phrases": [
          "Invariant",
          "InvariantChecker",
          "enforcement"
        ]
      },
      {
        "file": "/home/user/ggen/crates/ggen-marketplace/src/guards/mod.rs",
        "sections": "full file",
        "strength": 0.9,
        "key_phrases": [
          "guard",
          "invariant",
          "enforcement",
          "validation"
        ]
      }
    ]
  },
  "analysis_summary": {
    "total_files_scanned": 1921,
    "files_with_concept_matches": 47,
    "concepts_with_evidence": 16,
    "concepts_with_no_evidence": [
      "C_NOMRG_GRAPH_OVERLAY"
    ],
    "systems_discovered": {
      "ggen": {
        "file_count": 1921,
        "primary_evidence_files": 15,
        "strength": "high",
        "description": "Universal projection engine implementing ontology-first code generation"
      },
      "μ-kernel": {
        "file_count": 8,
        "primary_evidence_files": 5,
        "strength": "high",
        "description": "Deterministic decision kernel with timing guarantees (τ ≤ 8ms)"
      },
      "KNHK": {
        "file_count": 20,
        "primary_evidence_files": 6,
        "strength": "medium",
        "description": "Kinetic Knowledge Hypergraph - referenced but not fully implemented"
      },
      "AHI": {
        "file_count": 20,
        "primary_evidence_files": 8,
        "strength": "high",
        "description": "Autonomic Hyper Intelligence with MAPE-K loop implementation"
      },
      "CTT": {
        "file_count": 20,
        "primary_evidence_files": 4,
        "strength": "medium",
        "description": "Chicago TDD Tools - 12 phase verification pipeline"
      },
      "clnrm": {
        "file_count": 20,
        "primary_evidence_files": 3,
        "strength": "low",
        "description": "Cleanroom hermetic testing - templates exist, limited implementation"
      },
      "CNV": {
        "file_count": 20,
        "primary_evidence_files": 2,
        "strength": "medium",
        "description": "Clap-noun-verb agent CLI - ontology exists, partial implementation"
      },
      "DFLSS": {
        "file_count": 20,
        "primary_evidence_files": 2,
        "strength": "low",
        "description": "Design for Lean Six Sigma - documented in commands, not implemented"
      }
    },
    "concept_strength_summary": {
      "strong_evidence": [
        "C_GRAPH_UNIVERSE_PRIMARY",
        "C_CODE_AS_PROJECTION",
        "C_RECEIPTS_AND_PROOFS",
        "C_MU_KERNEL_PHYSICS",
        "C_TIMING_BOUNDS_ENFORCED",
        "C_UNIVERSE_PROJECTION_AXIOM",
        "C_RECEIPT_CHAIN_VERIFICATION",
        "C_AGENTS_ONLY_ARCHITECTURE",
        "C_INVARIANT_ENFORCEMENT",
        "C_GGEN_PROJECTION_ENGINE",
        "C_AHI_GOVERNANCE"
      ],
      "medium_evidence": [
        "C_KNHK_GRAPH_PRIMARY",
        "C_CTT_12_PHASE_VERIFICATION",
        "C_CNV_AGENT_CLI"
      ],
      "weak_evidence": [
        "C_DFLSS_FLOW",
        "C_CLNRM_HERMETIC_TESTING"
      ],
      "no_evidence": [
        "C_NOMRG_GRAPH_OVERLAY"
      ]
    },
    "key_findings": [
      "The ggen repository demonstrates strong evidence for the graph-universe thesis with 11 concepts having strength ≥ 0.9",
      "Core axiom A = μ(O) is implemented with full provenance in ggen-dod crate",
      "μ-kernel physics with τ ≤ 8ms (CHATMAN_CONSTANT) is enforced in code and tests",
      "Receipt and proof systems are production-ready with HMAC-SHA256 and Ed25519 signatures",
      "AHI governance with MAPE-K loop is fully implemented in ggen-domain",
      "Ontology-first architecture is demonstrated through meta-ontology.ttl and 69+ marketplace packages",
      "Projection engine (ggen) generates code from RDF ontologies using SPARQL queries",
      "Agent-only architecture is explicit in Definition of Done requirements",
      "KNHK referenced but not fully implemented as separate system",
      "CTT (Chicago TDD Tools) documented but not complete 12-phase implementation",
      "nomrg (no-merge graph overlays) has minimal to no evidence in current codebase"
    ],
    "repository_maturity": {
      "ggen_core": "production-ready",
      "mu_kernel": "production-ready",
      "ahi_governance": "production-ready",
      "knhk": "design/partial",
      "ctt": "in-progress",
      "clnrm": "template-stage",
      "cnv": "design/partial",
      "dflss": "documentation-only",
      "nomrg": "not-started"
    },
    "evidence_confidence": {
      "overall": 0.82,
      "universe_concepts": 0.95,
      "kernel_concepts": 0.93,
      "knowledge_concepts": 0.75,
      "verification_concepts": 0.85,
      "interface_concepts": 0.65
    }
  }
}
