# Rust build artifacts
target/
Cargo.lock

# Debug files
**/*.rs.bk
*.pdb

# IDE and editor files
.vscode/
.idea/
*.swp
*.swo
*~
.DS_Store

# OS-specific files
Thumbs.db
desktop.ini

# Test and coverage files
*.profraw
*.profdata
coverage/
*.gcda
*.gcno

# Documentation build
doc/
book/
docs/book/

# Temporary files
*.tmp
*.temp
*.log

# Test data
tests/data/
tests/bigwig_test_data/
*.h5ad
*.h5

# Python cache
__pycache__/
*.pyc
*.pyo
.pytest_cache/


.methyltracer_sparse_temp_*