# Generated by Cargo
# will have compiled files and executables
debug
target

# These are backup files generated by rustfmt
**/*.rs.bk

# MSVC Windows builds of rustc generate these, which store debugging information
*.pdb

# Generated by cargo mutants
# Contains mutation testing data
**/mutants.out*/

# RustRover
#  JetBrains specific template is maintained in a separate JetBrains.gitignore that can
#  be found at https://github.com/github/gitignore/blob/main/Global/JetBrains.gitignore
#  and can be added to the global gitignore or merged into this file.  For a more nuclear
#  option (not recommended) you can uncomment the following to ignore the entire idea folder.
#.idea/


# Added by cargo

/target

CLAUDE.md
TODO.md
poa_crate_handoff.md
design/
ref/
test_plots/
bench/work/
*.pyc

# Real patient data -- extracted from BAM, not for public repo
tests/fixtures/rfc1_canvas_hp1.fa
tests/fixtures/rfc1_canvas_hp1_partial.fa
tests/fixtures/rfc1_canvas_hp2.fa
tests/rfc1_real_data.rs
